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-rw-r--r--docs/tool/Modules/NaturalDocs/SymbolTable/File.pm186
-rw-r--r--docs/tool/Modules/NaturalDocs/SymbolTable/IndexElement.pm522
-rw-r--r--docs/tool/Modules/NaturalDocs/SymbolTable/Reference.pm273
-rw-r--r--docs/tool/Modules/NaturalDocs/SymbolTable/ReferenceTarget.pm97
-rw-r--r--docs/tool/Modules/NaturalDocs/SymbolTable/Symbol.pm428
-rw-r--r--docs/tool/Modules/NaturalDocs/SymbolTable/SymbolDefinition.pm96
6 files changed, 1602 insertions, 0 deletions
diff --git a/docs/tool/Modules/NaturalDocs/SymbolTable/File.pm b/docs/tool/Modules/NaturalDocs/SymbolTable/File.pm
new file mode 100644
index 00000000..71f93645
--- /dev/null
+++ b/docs/tool/Modules/NaturalDocs/SymbolTable/File.pm
@@ -0,0 +1,186 @@
+###############################################################################
+#
+#   Package: NaturalDocs::SymbolTable::File
+#
+###############################################################################
+#
+#   A class representing a file, keeping track of what symbols and references are defined in it.
+#
+###############################################################################
+
+# This file is part of Natural Docs, which is Copyright (C) 2003-2008 Greg Valure
+# Natural Docs is licensed under the GPL
+
+use strict;
+use integer;
+
+package NaturalDocs::SymbolTable::File;
+
+
+###############################################################################
+# Group: Implementation
+
+#
+#   Constants: Members
+#
+#   The class is implemented as a blessed arrayref.  The following constants are its members.
+#
+#       SYMBOLS       - An existence hashref of the <SymbolStrings> it defines.
+#       REFERENCES  - An existence hashref of the <ReferenceStrings> in the file.
+#
+
+# DEPENDENCY: New() depends on the order of these constants.  If they change, New() has to be updated.
+use constant SYMBOLS => 0;
+use constant REFERENCES => 1;
+
+
+###############################################################################
+# Group: Modification Functions
+
+
+#
+#   Function: New
+#
+#   Creates and returns a new object.
+#
+sub New
+    {
+    my $package = shift;
+
+    # Let's make it safe, since normally you can pass values to New.  Having them just be ignored would be an obscure error.
+    if (scalar @_)
+        {  die "You can't pass values to NaturalDocs::SymbolTable::File->New()\n";  };
+
+    # DEPENDENCY: This code depends on the order of the member constants.
+    my $object = [ { }, { } ];
+    bless $object, $package;
+
+    return $object;
+    };
+
+
+#
+#   Function: AddSymbol
+#
+#   Adds a <SymbolString> definition.
+#
+#   Parameters:
+#
+#       symbol - The <SymbolString> being added.
+#
+sub AddSymbol #(symbol)
+    {
+    my ($self, $symbol) = @_;
+    $self->[SYMBOLS]{$symbol} = 1;
+    };
+
+
+#
+#   Function: DeleteSymbol
+#
+#   Removes a <SymbolString> definition.
+#
+#   Parameters:
+#
+#       symbol - The <SymbolString> to delete.
+#
+sub DeleteSymbol #(symbol)
+    {
+    my ($self, $symbol) = @_;
+    delete $self->[SYMBOLS]{$symbol};
+    };
+
+
+#
+#   Function: AddReference
+#
+#   Adds a reference definition.
+#
+#   Parameters:
+#
+#       referenceString - The <ReferenceString> being added.
+#
+sub AddReference #(referenceString)
+    {
+    my ($self, $referenceString) = @_;
+    $self->[REFERENCES]{$referenceString} = 1;
+    };
+
+
+#
+#   Function: DeleteReference
+#
+#   Removes a reference definition.
+#
+#   Parameters:
+#
+#       referenceString - The <ReferenceString> to delete.
+#
+sub DeleteReference #(referenceString)
+    {
+    my ($self, $referenceString) = @_;
+    delete $self->[REFERENCES]{$referenceString};
+    };
+
+
+
+###############################################################################
+# Group: Information Functions
+
+
+#
+#   Function: HasAnything
+#
+#   Returns whether the file has any symbol or reference definitions at all.
+#
+sub HasAnything
+    {
+    return (scalar keys %{$_[0]->[SYMBOLS]} || scalar keys %{$_[0]->[REFERENCES]});
+    };
+
+#
+#   Function: Symbols
+#
+#   Returns an array of all the <SymbolStrings> defined in this file.  If none, returns an empty array.
+#
+sub Symbols
+    {
+    return keys %{$_[0]->[SYMBOLS]};
+    };
+
+
+#
+#   Function: References
+#
+#   Returns an array of all the <ReferenceStrings> defined in this file.  If none, returns an empty array.
+#
+sub References
+    {
+    return keys %{$_[0]->[REFERENCES]};
+    };
+
+
+#
+#   Function: DefinesSymbol
+#
+#   Returns whether the file defines the passed <SymbolString> or not.
+#
+sub DefinesSymbol #(symbol)
+    {
+    my ($self, $symbol) = @_;
+    return exists $self->[SYMBOLS]{$symbol};
+    };
+
+
+#
+#   Function: DefinesReference
+#
+#   Returns whether the file defines the passed <ReferenceString> or not.
+#
+sub DefinesReference #(referenceString)
+    {
+    my ($self, $referenceString) = @_;
+    return exists $self->[REFERENCES]{$referenceString};
+    };
+
+1;
diff --git a/docs/tool/Modules/NaturalDocs/SymbolTable/IndexElement.pm b/docs/tool/Modules/NaturalDocs/SymbolTable/IndexElement.pm
new file mode 100644
index 00000000..e54ce44c
--- /dev/null
+++ b/docs/tool/Modules/NaturalDocs/SymbolTable/IndexElement.pm
@@ -0,0 +1,522 @@
+###############################################################################
+#
+#   Class: NaturalDocs::SymbolTable::IndexElement
+#
+###############################################################################
+#
+#   A class representing part of an indexed symbol.
+#
+###############################################################################
+
+# This file is part of Natural Docs, which is Copyright (C) 2003-2008 Greg Valure
+# Natural Docs is licensed under the GPL
+
+use Tie::RefHash;
+
+use strict;
+use integer;
+
+
+package NaturalDocs::SymbolTable::IndexElement;
+
+
+#
+#   Topic: How IndexElements Work
+#
+#   This is a little tricky, so make sure you understand this.  Indexes are sorted by symbol, then packages, then file.  If there is only
+#   one package for a symbol, or one file definition for a package/symbol, they are added inline to the entry.  However, if there are
+#   multiple packages or files, the function for it returns an arrayref of IndexElements instead.  Which members are defined and
+#   undefined should follow common sense.  For example, if a symbol is defined in multiple packages, the symbol's IndexElement
+#   will not define <File()>, <Type()>, or <Prototype()>; those will be defined in child elements.  Similarly, the child elements will
+#   not define <Symbol()> since it's redundant.
+#
+#   Diagrams may be clearer.  If a member isn't listed for an element, it isn't defined.
+#
+#   A symbol that only has one package and file:
+#   > [Element]
+#   > - Symbol
+#   > - Package
+#   > - File
+#   > - Type
+#   > - Prototype
+#   > - Summary
+#
+#   A symbol that is defined by multiple packages, each with only one file:
+#   > [Element]
+#   > - Symbol
+#   > - Package
+#   >     [Element]
+#   >     - Package
+#   >     - File
+#   >     - Type
+#   >     - Prototype
+#   >     - Summary
+#   >     [Element]
+#   >     - ...
+#
+#   A symbol that is defined by one package, but has multiple files
+#   > [Element]
+#   > - Symbol
+#   > - Package
+#   > - File
+#   >    [Element]
+#   >    - File
+#   >    - Type
+#   >    - Protype
+#   >    - Summary
+#   >    [Element]
+#   >    - ...
+#
+#   A symbol that is defined by multiple packages which have multiple files:
+#   > [Element]
+#   > - Symbol
+#   > - Package
+#   >    [Element]
+#   >    - Package
+#   >    - File
+#   >      [Element]
+#   >      - File
+#   >      - Type
+#   >      - Prototype
+#   >      - Summary
+#   >      [Element]
+#   >      - ...
+#   >    [Element]
+#   >    - ...
+#
+#   Why is it done this way?:
+#
+#   Because it makes it easier to generate nice indexes since all the splitting and combining is done for you.  If a symbol
+#   has only one package, you just want to link to it, you don't want to break out a subindex for just one package.  However, if
+#   it has multiple package, you do want the subindex and to link to each one individually.  Use <HasMultiplePackages()> and
+#   <HasMultipleFiles()> to determine whether you need to add a subindex for it.
+#
+#
+#   Combining Properties:
+#
+#   All IndexElements also have combining properties set.
+#
+#   CombinedType - The general <TopicType> of the entry.  Conflicts combine into <TOPIC_GENERAL>.
+#   PackageSeparator - The package separator symbol of the entry.  Conflicts combine into a dot.
+#
+#   So if an IndexElement only has one definition, <CombinedType()> is the same as the <TopicType> and <PackageSeparator()>
+#   is that of the definition's language.  If other definitions are added and they have the same properties, the combined properties
+#   will remain the same.  However, if they're different, they switch values as noted above.
+#
+#
+#   Sortable Symbol:
+#
+#   <SortableSymbol()> is a pseudo-combining property.  There were a few options for dealing with multiple languages defining
+#   the same symbol but stripping different prefixes off it, but ultimately I decided to go with whatever the language does that
+#   has the most definitions.  There's not likely to be many conflicts here in the real world; probably the only thing would be
+#   defining it in a text file and forgetting to specify the prefixes to strip there too.  So this works.
+#
+#   Ties are broken pretty much randomly, except that text files always lose if its one of the options.
+#
+#   It's a pseudo-combining property because it's done after the IndexElements are all filled in and only stored in the top-level
+#   ones.
+#
+
+
+###############################################################################
+# Group: Implementation
+
+#
+#   Constants: Members
+#
+#   The class is implemented as a blessed arrayref.  The following constants are its members.
+#
+#   SYMBOL - The <SymbolString> without the package portion.
+#   PACKAGE - The package <SymbolString>.  Will be a package <SymbolString>, undef for global, or an arrayref of
+#                    <NaturalDocs::SymbolTable::IndexElement> objects if multiple packages define the symbol.
+#   FILE - The <FileName> the package/symbol is defined in.  Will be the file name or an arrayref of
+#            <NaturalDocs::SymbolTable::IndexElements> if multiple files define the package/symbol.
+#   TYPE - The package/symbol/file <TopicType>.
+#   PROTOTYPE - The package/symbol/file prototype, or undef if not applicable.
+#   SUMMARY - The package/symbol/file summary, or undef if not applicable.
+#   COMBINED_TYPE - The combined <TopicType> of the element.
+#   PACKAGE_SEPARATOR - The combined package separator symbol of the element.
+#   SORTABLE_SYMBOL - The sortable symbol as a text string.
+#   IGNORED_PREFIX - The part of the symbol that was stripped off to make the sortable symbol.
+#
+use NaturalDocs::DefineMembers 'SYMBOL', 'Symbol()',
+                                                 'PACKAGE', 'Package()',
+                                                 'FILE', 'File()',
+                                                 'TYPE', 'Type()',
+                                                 'PROTOTYPE', 'Prototype()',
+                                                 'SUMMARY', 'Summary()',
+                                                 'COMBINED_TYPE', 'CombinedType()',
+                                                 'PACKAGE_SEPARATOR', 'PackageSeparator()',
+                                                 'SORTABLE_SYMBOL', 'SortableSymbol()',
+                                                 'IGNORED_PREFIX', 'IgnoredPrefix()';
+# DEPENDENCY: New() depends on the order of these constants and that there is no inheritance..
+
+
+###############################################################################
+# Group: Modification Functions
+
+#
+#   Function: New
+#
+#   Returns a new object.
+#
+#   This should only be used for creating an entirely new symbol.  You should *not* pass arrayrefs as package or file parameters
+#   if you are calling this externally.  Use <Merge()> instead.
+#
+#   Parameters:
+#
+#       symbol  - The <SymbolString> without the package portion.
+#       package - The package <SymbolString>, or undef for global.
+#       file  - The symbol's definition file.
+#       type  - The symbol's <TopicType>.
+#       prototype  - The symbol's prototype, if applicable.
+#       summary  - The symbol's summary, if applicable.
+#
+#   Optional Parameters:
+#
+#       These parameters don't need to be specified.  You should ignore them when calling this externally.
+#
+#       combinedType - The symbol's combined <TopicType>.
+#       packageSeparator - The symbol's combined package separator symbol.
+#
+sub New #(symbol, package, file, type, prototype, summary, combinedType, packageSeparator)
+    {
+    # DEPENDENCY: This depends on the parameter list being in the same order as the constants.
+
+    my $self = shift;
+
+    my $object = [ @_ ];
+    bless $object, $self;
+
+    if (!defined $object->[COMBINED_TYPE])
+        {  $object->[COMBINED_TYPE] = $object->[TYPE];  };
+
+    if (!defined $object->[PACKAGE_SEPARATOR])
+        {
+        if ($object->[TYPE] eq ::TOPIC_FILE())
+            {  $object->[PACKAGE_SEPARATOR] = '.';  }
+        else
+            {
+            $object->[PACKAGE_SEPARATOR] = NaturalDocs::Languages->LanguageOf($object->[FILE])->PackageSeparator();
+            };
+        };
+
+    return $object;
+    };
+
+
+#
+#   Function: Merge
+#
+#   Adds another definition of the same symbol.  Perhaps it has a different package or defining file.
+#
+#   Parameters:
+#
+#       package - The package <SymbolString>, or undef for global.
+#       file  - The symbol's definition file.
+#       type  - The symbol's <TopicType>.
+#       prototype  - The symbol's protoype if applicable.
+#       summary  - The symbol's summary if applicable.
+#
+sub Merge #(package, file, type, prototype, summary)
+    {
+    my ($self, $package, $file, $type, $prototype, $summary) = @_;
+
+    # If there's only one package...
+    if (!$self->HasMultiplePackages())
+        {
+        # If there's one package and it's the same as the new one...
+        if ($package eq $self->Package())
+            {
+            $self->MergeFile($file, $type, $prototype, $summary);
+            }
+
+        # If there's one package and the new one is different...
+        else
+            {
+            my $selfDefinition = NaturalDocs::SymbolTable::IndexElement->New(undef, $self->Package(), $self->File(),
+                                                                                                                 $self->Type(), $self->Prototype(),
+                                                                                                                 $self->Summary(), $self->CombinedType(),
+                                                                                                                 $self->PackageSeparator());
+            my $newDefinition = NaturalDocs::SymbolTable::IndexElement->New(undef, $package, $file, $type, $prototype,
+                                                                                                                  $summary);
+
+            $self->[PACKAGE] = [ $selfDefinition, $newDefinition ];
+            $self->[FILE] = undef;
+            $self->[TYPE] = undef;
+            $self->[PROTOTYPE] = undef;
+            $self->[SUMMARY] = undef;
+
+            if ($newDefinition->Type() ne $self->CombinedType())
+                {  $self->[COMBINED_TYPE] = ::TOPIC_GENERAL();  };
+            if ($newDefinition->PackageSeparator() ne $self->PackageSeparator())
+                {  $self->[PACKAGE_SEPARATOR] = '.';  };
+            };
+        }
+
+    # If there's more than one package...
+    else
+        {
+        # See if the new package is one of them.
+        my $selfPackages = $self->Package();
+        my $matchingPackage;
+
+        foreach my $testPackage (@$selfPackages)
+            {
+            if ($package eq $testPackage->Package())
+                {
+                $testPackage->MergeFile($file, $type, $prototype, $summary);;
+                return;
+                };
+            };
+
+        my $newDefinition = NaturalDocs::SymbolTable::IndexElement->New(undef, $package, $file, $type, $prototype,
+                                                                                                              $summary);
+        push @{$self->[PACKAGE]}, $newDefinition;
+
+        if ($newDefinition->Type() ne $self->CombinedType())
+            {  $self->[COMBINED_TYPE] = ::TOPIC_GENERAL();  };
+        if ($newDefinition->PackageSeparator() ne $self->PackageSeparator())
+            {  $self->[PACKAGE_SEPARATOR] = '.';  };
+        };
+    };
+
+
+#
+#   Function: Sort
+#
+#   Sorts the package and file lists of the symbol.
+#
+sub Sort
+    {
+    my $self = shift;
+
+    if ($self->HasMultipleFiles())
+        {
+        @{$self->[FILE]} = sort { ::StringCompare($a->File(), $b->File()) } @{$self->File()};
+        }
+
+    elsif ($self->HasMultiplePackages())
+        {
+        @{$self->[PACKAGE]} = sort { ::StringCompare( $a->Package(), $b->Package()) } @{$self->[PACKAGE]};
+
+        foreach my $packageElement ( @{$self->[PACKAGE]} )
+            {
+            if ($packageElement->HasMultipleFiles())
+                {  $packageElement->Sort();  };
+            };
+        };
+    };
+
+
+#
+#   Function: MakeSortableSymbol
+#
+#   Generates <SortableSymbol()> and <IgnoredPrefix()>.  Should only be called after everything is merged.
+#
+sub MakeSortableSymbol
+    {
+    my $self = shift;
+
+    my $finalLanguage;
+
+    if ($self->HasMultiplePackages() || $self->HasMultipleFiles())
+        {
+        # Collect all the files that define this symbol.
+
+        my @files;
+
+        if ($self->HasMultipleFiles())
+            {
+            my $fileElements = $self->File();
+
+            foreach my $fileElement (@$fileElements)
+                {  push @files, $fileElement->File();  };
+            }
+        else # HasMultiplePackages
+            {
+            my $packages = $self->Package();
+
+            foreach my $package (@$packages)
+                {
+                if ($package->HasMultipleFiles())
+                    {
+                    my $fileElements = $package->File();
+
+                    foreach my $fileElement (@$fileElements)
+                        {  push @files, $fileElement->File();  };
+                    }
+                else
+                    {  push @files, $package->File();  };
+                };
+            };
+
+
+        # Determine which language defines it the most.
+
+        # Keys are language objects, values are counts.
+        my %languages;
+        tie %languages, 'Tie::RefHash';
+
+        foreach my $file (@files)
+            {
+            my $language = NaturalDocs::Languages->LanguageOf($file);
+
+            if (exists $languages{$language})
+                {  $languages{$language}++;  }
+            else
+                {  $languages{$language} = 1;  };
+            };
+
+        my $topCount = 0;
+        my @topLanguages;
+
+        while (my ($language, $count) = each %languages)
+            {
+            if ($count > $topCount)
+                {
+                $topCount = $count;
+                @topLanguages = ( $language );
+                }
+            elsif ($count == $topCount)
+                {
+                push @topLanguages, $language;
+                };
+            };
+
+        if (scalar @topLanguages == 1)
+            {  $finalLanguage = $topLanguages[0];  }
+        else
+            {
+            if ($topLanguages[0]->Name() ne 'Text File')
+                {  $finalLanguage = $topLanguages[0];  }
+            else
+                {  $finalLanguage = $topLanguages[1];  };
+            };
+        }
+
+    else # !hasMultiplePackages && !hasMultipleFiles
+        {  $finalLanguage = NaturalDocs::Languages->LanguageOf($self->File());  };
+
+    my $textSymbol = NaturalDocs::SymbolString->ToText($self->Symbol(), $self->PackageSeparator());
+    my $ignoredPrefixLength = $finalLanguage->IgnoredPrefixLength($textSymbol, $self->CombinedType());
+
+    if ($ignoredPrefixLength)
+        {
+        $self->[IGNORED_PREFIX] = substr($textSymbol, 0, $ignoredPrefixLength);
+        $self->[SORTABLE_SYMBOL] = substr($textSymbol, $ignoredPrefixLength);
+        }
+    else
+        {  $self->[SORTABLE_SYMBOL] = $textSymbol;  };
+    };
+
+
+
+###############################################################################
+#
+#   Functions: Information Functions
+#
+#   Symbol - Returns the <SymbolString> without the package portion.
+#   Package - If <HasMultiplePackages()> is true, returns an arrayref of <NaturalDocs::SymbolTable::IndexElement> objects.
+#                  Otherwise returns the package <SymbolString>, or undef if global.
+#   File - If <HasMultipleFiles()> is true, returns an arrayref of <NaturalDocs::SymbolTable::IndexElement> objects.  Otherwise
+#           returns the name of the definition file.
+#   Type - Returns the <TopicType> of the package/symbol/file, if applicable.
+#   Prototype - Returns the prototype of the package/symbol/file, if applicable.
+#   Summary - Returns the summary of the package/symbol/file, if applicable.
+#   CombinedType - Returns the combined <TopicType> of the element.
+#   PackageSeparator - Returns the combined package separator symbol of the element.
+#   SortableSymbol - Returns the sortable symbol as a text string.  Only available after calling <MakeSortableSymbol()>.
+#   IgnoredPrefix - Returns the part of the symbol that was stripped off to make the <SortableSymbol()>, or undef if none.
+#                          Only available after calling <MakeSortableSymbol()>.
+#
+
+#   Function: HasMultiplePackages
+#   Returns whether <Packages()> is broken out into more elements.
+sub HasMultiplePackages
+    {  return ref($_[0]->[PACKAGE]);  };
+
+#   Function: HasMultipleFiles
+#   Returns whether <File()> is broken out into more elements.
+sub HasMultipleFiles
+    {  return ref($_[0]->[FILE]);  };
+
+
+
+
+
+
+###############################################################################
+# Group: Support Functions
+
+#
+#   Function: MergeFile
+#
+#   Adds another definition of the same package/symbol.  Perhaps the file is different.
+#
+#   Parameters:
+#
+#       file  - The package/symbol's definition file.
+#       type  - The package/symbol's <TopicType>.
+#       prototype  - The package/symbol's protoype if applicable.
+#       summary  - The package/symbol's summary if applicable.
+#
+sub MergeFile #(file, type, prototype, summary)
+    {
+    my ($self, $file, $type, $prototype, $summary) = @_;
+
+    # If there's only one file...
+    if (!$self->HasMultipleFiles())
+        {
+        # If there's one file and it's the different from the new one...
+        if ($file ne $self->File())
+            {
+            my $selfDefinition = NaturalDocs::SymbolTable::IndexElement->New(undef, undef, $self->File(), $self->Type(),
+                                                                                                                 $self->Prototype(), $self->Summary(),
+                                                                                                                 $self->CombinedType(),
+                                                                                                                 $self->PackageSeparator());
+            my $newDefinition = NaturalDocs::SymbolTable::IndexElement->New(undef, undef, $file, $type, $prototype,
+                                                                                                                  $summary);
+
+            $self->[FILE] = [ $selfDefinition, $newDefinition ];
+            $self->[TYPE] = undef;
+            $self->[PROTOTYPE] = undef;
+            $self->[SUMMARY] = undef;
+
+            if ($newDefinition->Type() ne $self->CombinedType())
+                {  $self->[COMBINED_TYPE] = ::TOPIC_GENERAL();  };
+            if ($newDefinition->PackageSeparator() ne $self->PackageSeparator())
+                {  $self->[PACKAGE_SEPARATOR] = '.';  };
+            }
+
+        # If the file was the same, just ignore the duplicate in the index.
+        }
+
+    # If there's more than one file...
+    else
+        {
+        # See if the new file is one of them.
+        my $files = $self->File();
+
+        foreach my $testElement (@$files)
+            {
+            if ($testElement->File() eq $file)
+                {
+                # If the new file's already in the index, ignore the duplicate.
+                return;
+                };
+            };
+
+        my $newDefinition = NaturalDocs::SymbolTable::IndexElement->New(undef, undef, $file, $type, $prototype,
+                                                                                                              $summary);
+        push @{$self->[FILE]}, $newDefinition;
+
+        if ($newDefinition->Type() ne $self->CombinedType())
+            {  $self->[COMBINED_TYPE] = ::TOPIC_GENERAL();  };
+        if ($newDefinition->PackageSeparator() ne $self->PackageSeparator())
+            {  $self->[PACKAGE_SEPARATOR] = '.';  };
+        };
+    };
+
+
+1;
diff --git a/docs/tool/Modules/NaturalDocs/SymbolTable/Reference.pm b/docs/tool/Modules/NaturalDocs/SymbolTable/Reference.pm
new file mode 100644
index 00000000..ed8c3059
--- /dev/null
+++ b/docs/tool/Modules/NaturalDocs/SymbolTable/Reference.pm
@@ -0,0 +1,273 @@
+###############################################################################
+#
+#   Package: NaturalDocs::SymbolTable::Reference
+#
+###############################################################################
+#
+#   A class representing a symbol or a potential symbol.
+#
+###############################################################################
+
+# This file is part of Natural Docs, which is Copyright (C) 2003-2008 Greg Valure
+# Natural Docs is licensed under the GPL
+
+use strict;
+use integer;
+
+package NaturalDocs::SymbolTable::Reference;
+
+
+###############################################################################
+# Group: Implementation
+
+#
+#   Constants: Members
+#
+#   The class is implemented as a blessed arrayref.  The following constants are its members.
+#
+#       DEFINITIONS                        - An existence hashref of the <FileNames> that define this reference.
+#       INTERPRETATIONS                - A hashref of the possible interpretations of this reference.  The keys are the <SymbolStrings>
+#                                                     and the values are the scores.
+#       CURRENT_INTERPRETATION  - The interpretation currently used as the reference target.  It will be the interpretation with
+#                                                     the highest score that is actually defined.  If none are defined, this item will be undef.
+#
+
+# DEPENDENCY: New() depends on the order of these constants.  If they change, New() has to be updated.
+use constant DEFINITIONS => 0;
+use constant INTERPRETATIONS => 1;
+use constant CURRENT_INTERPRETATION => 2;
+
+
+###############################################################################
+# Group: Modification Functions
+
+
+#
+#   Function: New
+#
+#   Creates and returns a new object.
+#
+sub New
+    {
+    my $package = shift;
+
+    # Let's make it safe, since normally you can pass values to New.  Having them just be ignored would be an obscure error.
+    if (scalar @_)
+        {  die "You can't pass values to NaturalDocs::SymbolTable::Reference->New()\n";  };
+
+    # DEPENDENCY: This code depends on the order of the member constants.
+    my $object = [ { }, { }, undef ];
+    bless $object, $package;
+
+    return $object;
+    };
+
+
+#
+#   Function: AddDefinition
+#
+#   Adds a reference definition.
+#
+#   Parameters:
+#
+#       file   - The <FileName> that defines the reference.
+#
+sub AddDefinition #(file)
+    {
+    my ($self, $file) = @_;
+
+    $self->[DEFINITIONS]{$file} = 1;
+    };
+
+
+#
+#   Function: DeleteDefinition
+#
+#   Removes a reference definition.
+#
+#   Parameters:
+#
+#       file - The <FileName> which has the definition to delete.
+#
+sub DeleteDefinition #(file)
+    {
+    my ($self, $file) = @_;
+
+    delete $self->[DEFINITIONS]{$file};
+    };
+
+
+#
+#   Function: AddInterpretation
+#
+#   Adds a symbol that this reference can be interpreted as.
+#
+#   Parameters:
+#
+#       symbol  - The <SymbolString>.
+#       score     - The score of this interpretation.
+#
+sub AddInterpretation #(symbol, score)
+    {
+    my ($self, $symbol, $score) = @_;
+
+    $self->[INTERPRETATIONS]{$symbol} = $score;
+    };
+
+
+#
+#   Function: DeleteInterpretation
+#
+#   Deletes a symbol that this reference can be interpreted as.
+#
+#   Parameters:
+#
+#       symbol - The <SymbolString> to delete.
+#
+sub DeleteInterpretation #(symbol)
+    {
+    my ($self, $symbol) = @_;
+
+    delete $self->[INTERPRETATIONS]{$symbol};
+    };
+
+
+#
+#   Function: DeleteAllInterpretationsButCurrent
+#
+#   Deletes all interpretations except for the current one.
+#
+sub DeleteAllInterpretationsButCurrent
+    {
+    my $self = shift;
+
+    if ($self->HasCurrentInterpretation())
+        {
+        my $score = $self->CurrentScore();
+
+        # Fastest way to clear a hash except for one item?  Make a new hash with just that item.
+        %{$self->[INTERPRETATIONS]} = ( $self->[CURRENT_INTERPRETATION] => $score );
+        };
+    };
+
+
+#
+#   Function: SetCurrentInterpretation
+#
+#   Changes the current interpretation.  The new one must already have been added via <AddInterpretation()>.
+#
+#   Parameters:
+#
+#       symbol - The <SymbolString>l to make the current interpretation.  Can be set to undef to clear it.
+#
+sub SetCurrentInterpretation #(symbol)
+    {
+    my ($self, $symbol) = @_;
+
+    $self->[CURRENT_INTERPRETATION] = $symbol;
+    };
+
+
+###############################################################################
+# Group: Information Functions
+
+
+#
+#   Function: Definitions
+#
+#   Returns an array of all the <FileNames> that define this reference.  If none do, returns an empty array.
+#
+sub Definitions
+    {
+    return keys %{$_[0]->[DEFINITIONS]};
+    };
+
+
+#
+#   Function: IsDefined
+#
+#   Returns whether the reference has any definitions or not.
+#
+sub IsDefined
+    {
+    return scalar keys %{$_[0]->[DEFINITIONS]};
+    };
+
+
+#
+#   Function: IsDefinedIn
+#
+#   Returns whether the reference is defined in the passed <FileName>.
+#
+sub IsDefinedIn #(file)
+    {
+    my ($self, $file) = @_;
+
+    return exists $self->[DEFINITIONS]{$file};
+    };
+
+
+#
+#   Function: Interpretations
+#
+#   Returns an array of all the <SymbolStrings> that this reference can be interpreted as.  If none, returns an empty array.
+#
+sub Interpretations
+    {
+    return keys %{$_[0]->[INTERPRETATIONS]};
+    };
+
+
+#
+#   Function: InterpretationsAndScores
+#
+#   Returns a hash of all the <SymbolStrings> that this reference can be interpreted as and their scores.  The keys are the <SymbolStrings>
+#   and the values are the scores.  If none, returns an empty hash.
+#
+sub InterpretationsAndScores
+    {
+    return %{$_[0]->[INTERPRETATIONS]};
+    };
+
+
+#
+#   Function: HasCurrentInterpretation
+#
+#   Returns whether the reference has a current interpretation or not.
+#
+sub HasCurrentInterpretation
+    {
+    return defined $_[0]->[CURRENT_INTERPRETATION];
+    };
+
+
+#
+#   Function: CurrentInterpretation
+#
+#   Returns the <SymbolString> of the current interpretation, or undef if none.
+#
+sub CurrentInterpretation
+    {
+    return $_[0]->[CURRENT_INTERPRETATION];
+    };
+
+
+#
+#   Function: CurrentScore
+#
+#   Returns the score of the current interpretation, or undef if none.
+#
+sub CurrentScore
+    {
+    my $self = shift;
+
+    if (defined $self->[CURRENT_INTERPRETATION])
+        {
+        return $self->[INTERPRETATIONS]{ $self->[CURRENT_INTERPRETATION] };
+        }
+    else
+        {  return undef;  };
+    };
+
+
+1;
diff --git a/docs/tool/Modules/NaturalDocs/SymbolTable/ReferenceTarget.pm b/docs/tool/Modules/NaturalDocs/SymbolTable/ReferenceTarget.pm
new file mode 100644
index 00000000..a1b2b0a5
--- /dev/null
+++ b/docs/tool/Modules/NaturalDocs/SymbolTable/ReferenceTarget.pm
@@ -0,0 +1,97 @@
+###############################################################################
+#
+#   Class: NaturalDocs::SymbolTable::ReferenceTarget
+#
+###############################################################################
+#
+#   A class for storing information about a reference target.
+#
+###############################################################################
+
+# This file is part of Natural Docs, which is Copyright (C) 2003-2008 Greg Valure
+# Natural Docs is licensed under the GPL
+
+use strict;
+use integer;
+
+package NaturalDocs::SymbolTable::ReferenceTarget;
+
+
+###############################################################################
+# Group: Implementation
+
+#
+#   Constants: Members
+#
+#   The class is implemented as a blessed arrayref.  The following constants are its members.
+#
+#       SYMBOL  - The target <SymbolString>.
+#       FILE        - The <FileName> the target is defined in.
+#       TYPE       - The target <TopicType>.
+#       PROTOTYPE - The target's prototype, or undef if none.
+#       SUMMARY    - The target's summary, or undef if none.
+#
+
+# DEPENDENCY: New() depends on the order of these constants.  If they change, New() has to be updated.
+use constant SYMBOL => 0;
+use constant FILE => 1;
+use constant TYPE => 2;
+use constant PROTOTYPE => 3;
+use constant SUMMARY => 4;
+
+###############################################################################
+# Group: Functions
+
+
+#
+#   Function: New
+#
+#   Creates and returns a new object.
+#
+#   Parameters:
+#
+#       symbol - The target <SymbolString>.
+#       file       - The <FileName> the target is defined in.
+#       type     - The <TopicType> of the target symbol.
+#       prototype - The target's prototype.  Set to undef if not defined or not applicable.
+#       summary - The target's summary.  Set to undef if not defined or not applicable.
+#
+sub New #(symbol, file, type, prototype, summary)
+    {
+    # DEPENDENCY: This code depends on the order of the member constants.
+
+    my $package = shift;
+
+    my $object = [ @_ ];
+    bless $object, $package;
+
+    return $object;
+    };
+
+
+# Function: Symbol
+# Returns the target's <SymbolString>.
+sub Symbol
+    {  return $_[0]->[SYMBOL];  };
+
+# Function: File
+# Returns the <FileName> the target is defined in.
+sub File
+    {  return $_[0]->[FILE];  };
+
+# Function: Type
+# Returns the target's <TopicType>.
+sub Type
+    {  return $_[0]->[TYPE];  };
+
+# Function: Prototype
+# Returns the target's prototype, or undef if not defined or not applicable.
+sub Prototype
+    {  return $_[0]->[PROTOTYPE];  };
+
+# Function: Summary
+# Returns the target's summary, or undef if not defined or not applicable.
+sub Summary
+    {  return $_[0]->[SUMMARY];  };
+
+1;
diff --git a/docs/tool/Modules/NaturalDocs/SymbolTable/Symbol.pm b/docs/tool/Modules/NaturalDocs/SymbolTable/Symbol.pm
new file mode 100644
index 00000000..f12858df
--- /dev/null
+++ b/docs/tool/Modules/NaturalDocs/SymbolTable/Symbol.pm
@@ -0,0 +1,428 @@
+###############################################################################
+#
+#   Package: NaturalDocs::SymbolTable::Symbol
+#
+###############################################################################
+#
+#   A class representing a symbol or a potential symbol.
+#
+###############################################################################
+
+# This file is part of Natural Docs, which is Copyright (C) 2003-2008 Greg Valure
+# Natural Docs is licensed under the GPL
+
+use strict;
+use integer;
+
+package NaturalDocs::SymbolTable::Symbol;
+
+
+###############################################################################
+# Group: Implementation
+
+#
+#   Constants: Members
+#
+#   The class is implemented as a blessed arrayref.  The following constants are its members.
+#
+#       DEFINITIONS             - A hashref of all the files which define this symbol.  The keys are the <FileNames>, and the values are
+#                                         <NaturalDocs::SymbolTable::SymbolDefinition> objects.  If no files define this symbol, this item will
+#                                          be undef.
+#       GLOBAL_DEFINITION  - The <FileName> which defines the global version of the symbol, which is what is used if
+#                                          a file references the symbol but does not have its own definition.  If there are no definitions, this
+#                                          item will be undef.
+#       REFERENCES              - A hashref of the references that can be interpreted as this symbol.  This doesn't mean these
+#                                          references necessarily are.  The keys are the reference strings, and the values are the scores of
+#                                          the interpretations.  If no references can be interpreted as this symbol, this item will be undef.
+#
+use constant DEFINITIONS => 0;
+use constant GLOBAL_DEFINITION => 1;
+use constant REFERENCES => 2;
+
+
+###############################################################################
+# Group: Modification Functions
+
+#
+#   Function: New
+#
+#   Creates and returns a new object.
+#
+sub New
+    {
+    my $package = shift;
+
+    # Let's make it safe, since normally you can pass values to New.  Having them just be ignored would be an obscure error.
+    if (scalar @_)
+        {  die "You can't pass values to NaturalDocs::SymbolTable::Symbol->New()\n";  };
+
+    my $object = [ undef, undef, undef ];
+    bless $object, $package;
+
+    return $object;
+    };
+
+#
+#   Function: AddDefinition
+#
+#   Adds a symbol definition.  If this is the first definition for this symbol, it will become the global definition.  If the definition
+#   already exists for the file, it will be ignored.
+#
+#   Parameters:
+#
+#       file   - The <FileName> that defines the symbol.
+#       type - The <TopicType> of the definition.
+#       prototype - The prototype of the definition, if applicable.  Undef otherwise.
+#       summary - The summary for the definition, if applicable.  Undef otherwise.
+#
+#   Returns:
+#
+#       Whether this provided the first definition for this symbol.
+#
+sub AddDefinition #(file, type, prototype, summary)
+    {
+    my ($self, $file, $type, $prototype, $summary) = @_;
+
+    my $isFirst;
+
+    if (!defined $self->[DEFINITIONS])
+        {
+        $self->[DEFINITIONS] = { };
+        $self->[GLOBAL_DEFINITION] = $file;
+        $isFirst = 1;
+        };
+
+    if (!exists $self->[DEFINITIONS]{$file})
+        {
+        $self->[DEFINITIONS]{$file} = NaturalDocs::SymbolTable::SymbolDefinition->New($type, $prototype, $summary);
+        };
+
+    return $isFirst;
+    };
+
+
+#
+#   Function: ChangeDefinition
+#
+#   Changes the information about an existing definition.
+#
+#   Parameters:
+#
+#       file   - The <FileName> that defines the symbol.  Must exist.
+#       type - The new <TopicType> of the definition.
+#       prototype - The new prototype of the definition, if applicable.  Undef otherwise.
+#       summary - The new summary of the definition, if applicable.  Undef otherwise.
+#
+sub ChangeDefinition #(file, type, prototype, summary)
+    {
+    my ($self, $file, $type, $prototype, $summary) = @_;
+
+    if (defined $self->[DEFINITIONS] &&
+        exists $self->[DEFINITIONS]{$file})
+        {
+        $self->[DEFINITIONS]{$file}->SetType($type);
+        $self->[DEFINITIONS]{$file}->SetPrototype($prototype);
+        $self->[DEFINITIONS]{$file}->SetSummary($summary);
+        };
+    };
+
+
+#
+#   Function: DeleteDefinition
+#
+#   Removes a symbol definition.  If the definition served as the global definition, a new one will be selected.
+#
+#   Parameters:
+#
+#       file - The <FileName> which contains definition to delete.
+#
+#   Returns:
+#
+#       Whether that was the only definition, and the symbol is now undefined.
+#
+sub DeleteDefinition #(file)
+    {
+    my ($self, $file) = @_;
+
+    # If there are no definitions...
+    if (!defined $self->[DEFINITIONS])
+        {  return undef;  };
+
+    delete $self->[DEFINITIONS]{$file};
+
+    # If there are no more definitions...
+    if (!scalar keys %{$self->[DEFINITIONS]})
+        {
+        $self->[DEFINITIONS] = undef;
+
+        # If definitions was previously defined, and now is empty, we can safely assume that the global definition was just deleted
+        # without checking it against $file.
+
+        $self->[GLOBAL_DEFINITION] = undef;
+
+        return 1;
+        }
+
+    # If there are more definitions and the global one was just deleted...
+    elsif ($self->[GLOBAL_DEFINITION] eq $file)
+        {
+        # Which one becomes global is pretty much random.
+        $self->[GLOBAL_DEFINITION] = (keys %{$self->[DEFINITIONS]})[0];
+        return undef;
+        };
+    };
+
+
+#
+#   Function: AddReference
+#
+#   Adds a reference that can be interpreted as this symbol.  It can be, but not necessarily is.
+#
+#   Parameters:
+#
+#       referenceString - The string of the reference.
+#       score                - The score of this interpretation.
+#
+sub AddReference #(referenceString, score)
+    {
+    my ($self, $referenceString, $score) = @_;
+
+    if (!defined $self->[REFERENCES])
+        {  $self->[REFERENCES] = { };  };
+
+    $self->[REFERENCES]{$referenceString} = $score;
+    };
+
+
+#
+#   Function: DeleteReference
+#
+#   Deletes a reference that can be interpreted as this symbol.
+#
+#   Parameters:
+#
+#       referenceString - The string of the reference to delete.
+#
+sub DeleteReference #(referenceString)
+    {
+    my ($self, $referenceString) = @_;
+
+    # If there are no definitions...
+    if (!defined $self->[REFERENCES])
+        {  return;  };
+
+    delete $self->[REFERENCES]{$referenceString};
+
+    # If there are no more definitions...
+    if (!scalar keys %{$self->[REFERENCES]})
+        {
+        $self->[REFERENCES] = undef;
+        };
+    };
+
+
+#
+#   Function: DeleteAllReferences
+#
+#   Removes all references that can be interpreted as this symbol.
+#
+sub DeleteAllReferences
+    {
+    $_[0]->[REFERENCES] = undef;
+    };
+
+
+###############################################################################
+# Group: Information Functions
+
+#
+#   Function: IsDefined
+#
+#   Returns whether the symbol is defined anywhere or not.  If it's not, that means it's just a potential interpretation of a
+#   reference.
+#
+sub IsDefined
+    {
+    return defined $_[0]->[GLOBAL_DEFINITION];
+    };
+
+#
+#   Function: IsDefinedIn
+#
+#   Returns whether the symbol is defined in the passed <FileName>.
+#
+sub IsDefinedIn #(file)
+    {
+    my ($self, $file) = @_;
+    return ($self->IsDefined() && exists $self->[DEFINITIONS]{$file});
+    };
+
+
+#
+#   Function: Definitions
+#
+#   Returns an array of all the <FileNames> that define this symbol.  If none do, will return an empty array.
+#
+sub Definitions
+    {
+    my $self = shift;
+
+    if ($self->IsDefined())
+        {  return keys %{$self->[DEFINITIONS]};  }
+    else
+        {  return ( );  };
+    };
+
+
+#
+#   Function: GlobalDefinition
+#
+#   Returns the <FileName> that contains the global definition of this symbol, or undef if the symbol isn't defined.
+#
+sub GlobalDefinition
+    {
+    return $_[0]->[GLOBAL_DEFINITION];
+    };
+
+
+#
+#   Function: TypeDefinedIn
+#
+#   Returns the <TopicType> of the symbol defined in the passed <FileName>, or undef if it's not defined in that file.
+#
+sub TypeDefinedIn #(file)
+    {
+    my ($self, $file) = @_;
+
+    if ($self->IsDefined())
+        {  return $self->[DEFINITIONS]{$file}->Type();  }
+    else
+        {  return undef;  };
+    };
+
+
+#
+#   Function: GlobalType
+#
+#   Returns the <TopicType> of the global definition, or undef if the symbol isn't defined.
+#
+sub GlobalType
+    {
+    my $self = shift;
+
+    my $globalDefinition = $self->GlobalDefinition();
+
+    if (!defined $globalDefinition)
+        {  return undef;  }
+    else
+        {  return $self->[DEFINITIONS]{$globalDefinition}->Type();  };
+    };
+
+
+#
+#   Function: PrototypeDefinedIn
+#
+#   Returns the prototype of symbol defined in the passed <FileName>, or undef if it doesn't exist or is not defined in that file.
+#
+sub PrototypeDefinedIn #(file)
+    {
+    my ($self, $file) = @_;
+
+    if ($self->IsDefined())
+        {  return $self->[DEFINITIONS]{$file}->Prototype();  }
+    else
+        {  return undef;  };
+    };
+
+
+#
+#   Function: GlobalPrototype
+#
+#   Returns the prototype of the global definition.  Will be undef if it doesn't exist or the symbol isn't defined.
+#
+sub GlobalPrototype
+    {
+    my $self = shift;
+
+    my $globalDefinition = $self->GlobalDefinition();
+
+    if (!defined $globalDefinition)
+        {  return undef;  }
+    else
+        {  return $self->[DEFINITIONS]{$globalDefinition}->Prototype();  };
+    };
+
+
+#
+#   Function: SummaryDefinedIn
+#
+#   Returns the summary of symbol defined in the passed <FileName>, or undef if it doesn't exist or is not defined in that file.
+#
+sub SummaryDefinedIn #(file)
+    {
+    my ($self, $file) = @_;
+
+    if ($self->IsDefined())
+        {  return $self->[DEFINITIONS]{$file}->Summary();  }
+    else
+        {  return undef;  };
+    };
+
+
+#
+#   Function: GlobalSummary
+#
+#   Returns the summary of the global definition.  Will be undef if it doesn't exist or the symbol isn't defined.
+#
+sub GlobalSummary
+    {
+    my $self = shift;
+
+    my $globalDefinition = $self->GlobalDefinition();
+
+    if (!defined $globalDefinition)
+        {  return undef;  }
+    else
+        {  return $self->[DEFINITIONS]{$globalDefinition}->Summary();  };
+    };
+
+
+#
+#   Function: HasReferences
+#
+#   Returns whether the symbol can be interpreted as any references.
+#
+sub HasReferences
+    {
+    return defined $_[0]->[REFERENCES];
+    };
+
+#
+#   Function: References
+#
+#   Returns an array of all the reference strings that can be interpreted as this symbol.  If none, will return an empty array.
+#
+sub References
+    {
+    if (defined $_[0]->[REFERENCES])
+        {  return keys %{$_[0]->[REFERENCES]};  }
+    else
+        {  return ( );  };
+    };
+
+
+#
+#   Function: ReferencesAndScores
+#
+#   Returns a hash of all the references that can be interpreted as this symbol and their scores.  The keys are the reference
+#   strings, and the values are the scores.  If none, will return an empty hash.
+#
+sub ReferencesAndScores
+    {
+    if (defined $_[0]->[REFERENCES])
+        {  return %{$_[0]->[REFERENCES]};  }
+    else
+        {  return ( );  };
+    };
+
+1;
diff --git a/docs/tool/Modules/NaturalDocs/SymbolTable/SymbolDefinition.pm b/docs/tool/Modules/NaturalDocs/SymbolTable/SymbolDefinition.pm
new file mode 100644
index 00000000..3992e1d1
--- /dev/null
+++ b/docs/tool/Modules/NaturalDocs/SymbolTable/SymbolDefinition.pm
@@ -0,0 +1,96 @@
+###############################################################################
+#
+#   Package: NaturalDocs::SymbolTable::SymbolDefinition
+#
+###############################################################################
+#
+#   A class representing a symbol definition.  This does not store the definition symbol, class, or file.
+#
+###############################################################################
+
+# This file is part of Natural Docs, which is Copyright (C) 2003-2008 Greg Valure
+# Natural Docs is licensed under the GPL
+
+use strict;
+use integer;
+
+package NaturalDocs::SymbolTable::SymbolDefinition;
+
+
+###############################################################################
+# Group: Implementation
+
+#
+#   Constants: Members
+#
+#   The class is implemented as a blessed arrayref.  The following constants are its members.
+#
+#       TYPE  - The symbol <TopicType>.
+#       PROTOTYPE  - The symbol's prototype, if applicable.  Will be undef otherwise.
+#       SUMMARY - The symbol's summary, if applicable.  Will be undef otherwise.
+#
+use constant TYPE => 0;
+use constant PROTOTYPE => 1;
+use constant SUMMARY => 2;
+# New depends on the order of the constants.
+
+
+###############################################################################
+# Group: Functions
+
+#
+#   Function: New
+#
+#   Creates and returns a new object.
+#
+#   Parameters:
+#
+#       type - The symbol <TopicType>.
+#       prototype  - The symbol prototype, if applicable.  Undef otherwise.
+#       summary - The symbol's summary, if applicable.  Undef otherwise.
+#
+sub New #(type, prototype, summary)
+    {
+    # This depends on the parameter list being the same as the constant order.
+
+    my $package = shift;
+
+    my $object = [ @_ ];
+    bless $object, $package;
+
+    return $object;
+    };
+
+
+#   Function: Type
+#   Returns the definition's <TopicType>.
+sub Type
+    {  return $_[0]->[TYPE];  };
+
+# Function: SetType
+# Changes the <TopicType>.
+sub SetType #(type)
+    {  $_[0]->[TYPE] = $_[1];  };
+
+#   Function: Prototype
+#   Returns the definition's prototype, or undef if it doesn't have one.
+sub Prototype
+    {  return $_[0]->[PROTOTYPE];  };
+
+# Function: SetPrototype
+# Changes the prototype.
+sub SetPrototype #(prototype)
+    {  $_[0]->[PROTOTYPE] = $_[1];  };
+
+#   Function: Summary
+#   Returns the definition's summary, or undef if it doesn't have one.
+sub Summary
+    {  return $_[0]->[SUMMARY];  };
+
+# Function: SetSummary
+# Changes the summary.
+sub SetSummary #(summary)
+    {  $_[0]->[SUMMARY] = $_[1];  };
+
+
+1;